IGS Browser 
                    
        

Investigations of the Intergenic Sequences

Sequence similarity


Structural similarity
IGS with obvious similarity with known proteins were screened using NCBI BLASTX of the IGS with NCBI nr database. A large majority – 1487 IGS showed identity with known proteins. more The 971 IGS with no obvious similarity to known proteins were analysed for their protein coding potential. The IGS were translated in all six reading frames (ExPaSy translate tool) and submitted to Phyre. A sample of results from Phyre were cross checked by submitting to 3D-Jury. 424 proteins could be predicted. more


Small peptides


IGS Peptides of length range 5–29 have not been analyzed in this study. But the details of those peptides have been added to the database and can be accessed here


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© Sathi Ravi Kanth Reddy, 2012